MaghrebDataLibMedV2, Main, Exploration, bibRecord, 000594

DNA barcoding of marine fishes from Saudi Arabian waters of the Gulf.

Identifieur interne : 000594 ( Main/Exploration ); précédent : 000593; suivant : 000595

DNA barcoding of marine fishes from Saudi Arabian waters of the Gulf.

Auteurs : Lotfi Rabaoui [Arabie saoudite] ; Lamia Yacoubi [Tunisie] ; Daria Sanna [Italie] ; Marco Casu [Italie] ; Fabio Scarpa [Italie] ; Yu-Jia Lin [Arabie saoudite] ; Kang-Ning Shen [Taïwan] ; Todd R. Clardy [Arabie saoudite] ; Marco Arculeo [Italie] ; Mohammad A. Qurban [Arabie saoudite]

Source :

Journal of fish biology [ 1095-8649 ] ; 2019.

RBID : pubmed:31469430

Descripteurs français

KwdFr :
- Analyse de séquence d'ADN (MeSH), Animaux (MeSH), Arabie saoudite (MeSH), Biodiversité (MeSH), Codage à barres de l'ADN pour la taxonomie (MeSH), Complexe IV de la chaîne respiratoire (composition chimique), Complexe IV de la chaîne respiratoire (génétique), Phylogenèse (MeSH), Poissons (classification), Poissons (génétique), Théorème de Bayes (MeSH).
MESH :
- composition chimique : Complexe IV de la chaîne respiratoire, Poissons.
- génétique : Complexe IV de la chaîne respiratoire, Poissons.
- Analyse de séquence d'ADN, Animaux, Arabie saoudite, Biodiversité, Codage à barres de l'ADN pour la taxonomie, Phylogenèse, Théorème de Bayes.
Wicri :
- geographic : Arabie saoudite.

English descriptors

KwdEn :
- Animals (MeSH), Bayes Theorem (MeSH), Biodiversity (MeSH), DNA Barcoding, Taxonomic (MeSH), Electron Transport Complex IV (chemistry), Electron Transport Complex IV (genetics), Fishes (classification), Fishes (genetics), Phylogeny (MeSH), Saudi Arabia (MeSH), Sequence Analysis, DNA (MeSH).
MESH :
- chemical , chemistry : Electron Transport Complex IV.
- chemical , genetics : Electron Transport Complex IV.
- geographic : Saudi Arabia.
- classification : Fishes.
- genetics : Fishes.
- Animals, Bayes Theorem, Biodiversity, DNA Barcoding, Taxonomic, Phylogeny, Sequence Analysis, DNA.

Abstract

We used the cytochrome oxidase subunit I (coI) gene DNA to barcode 117 endemic Gulf and cosmopolitan Indo-West Pacific fish species belonging to 54 families and 13 orders. Novel DNA barcodes were provided for 18 fish species (Trachinocephalus sp., Nematalosa sp., Herklotsichthys lossei, Upeneus doriae, Trachurus indicus, Apogonichthyoides taeniatus, Verulux cypselurus, Favonigobius sp., Suezichthus gracilis, Sillago sp., Brachirus orientalis, Pegusa sp., Lepidotrigla bispinosa, Lepidotrigla sp., Grammoplites suppositus, Hippichthys sp., Paramonacanthus sp. and Triacanthus sp.). The species delimitation analysis, conducted with Poisson tree processes- Bayesian PTP (PTP-bPTP) and nucleotide-divergence-threshold (NDT) models), found 137 and 119 entities respectively. Overall, NDT method, neighbour-joining species tree and the prior taxonomic assessment provided similar results. Among the 54 families considered, only 10 (Ariommatidae, Ephippidae, Leiognathidae, Nemipteridae, Plotosidae, Pomacanthidae, Pomacentridae, Priacanthidae and Rachycentridae) showed the occurrence of molecular diagnostic pure characters. The DNA barcoding database developed during this study will help ichthyologists to identify and resolve the taxonomic ambiguities they may encounter with the fishes occurring in The Gulf and throughout the region.

DOI: 10.1111/jfb.14130
PubMed: 31469430

Affiliations:

Links toward previous steps (curation, corpus...)

to stream PubMed, to step Corpus: 000226
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Le document en format XML

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<front><div type="abstract" xml:lang="en">We used the cytochrome oxidase subunit I (coI) gene DNA to barcode 117 endemic Gulf and cosmopolitan Indo-West Pacific fish species belonging to 54 families and 13 orders. Novel DNA barcodes were provided for 18 fish species (Trachinocephalus sp., Nematalosa sp., Herklotsichthys lossei, Upeneus doriae, Trachurus indicus, Apogonichthyoides taeniatus, Verulux cypselurus, Favonigobius sp., Suezichthus gracilis, Sillago sp., Brachirus orientalis, Pegusa sp., Lepidotrigla bispinosa, Lepidotrigla sp., Grammoplites suppositus, Hippichthys sp., Paramonacanthus sp. and Triacanthus sp.). The species delimitation analysis, conducted with Poisson tree processes- Bayesian PTP (PTP-bPTP) and nucleotide-divergence-threshold (NDT) models), found 137 and 119 entities respectively. Overall, NDT method, neighbour-joining species tree and the prior taxonomic assessment provided similar results. Among the 54 families considered, only 10 (Ariommatidae, Ephippidae, Leiognathidae, Nemipteridae, Plotosidae, Pomacanthidae, Pomacentridae, Priacanthidae and Rachycentridae) showed the occurrence of molecular diagnostic pure characters. The DNA barcoding database developed during this study will help ichthyologists to identify and resolve the taxonomic ambiguities they may encounter with the fishes occurring in The Gulf and throughout the region.</div>
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<name sortKey="Scarpa, Fabio" sort="Scarpa, Fabio" uniqKey="Scarpa F" first="Fabio" last="Scarpa">Fabio Scarpa</name>
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<country name="Taïwan"><noRegion><name sortKey="Shen, Kang Ning" sort="Shen, Kang Ning" uniqKey="Shen K" first="Kang-Ning" last="Shen">Kang-Ning Shen</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Wicri/Sante/explor/MaghrebDataLibMedV2/Data/Main/Exploration

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000594 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000594 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Wicri/Sante
   |area=    MaghrebDataLibMedV2
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:31469430
   |texte=   DNA barcoding of marine fishes from Saudi Arabian waters of the Gulf.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:31469430" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a MaghrebDataLibMedV2

This area was generated with Dilib version V0.6.38.
Data generation: Wed Jun 30 18:27:05 2021. Site generation: Wed Jun 30 18:34:21 2021

	Serveur sur les données et bibliothèques médicales au Maghreb (version finale)
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.

Serveur sur les données et bibliothèques médicales au Maghreb (version finale)

DNA barcoding of marine fishes from Saudi Arabian waters of the Gulf.

DNA barcoding of marine fishes from Saudi Arabian waters of the Gulf.

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki